List of Publications
Glydentify: An explainable deep learning platform for glycosyltransferase donor substrate prediction
R Fang, L Na, CJ Corulli, PK Prabhakar, SJ Berardinelli, A Venkat, et al.
bioRxiv, 2026
GapClean: Memory-Efficient Gap Removal for Large-Scale Multiple Sequence Alignments
A Venkat
bioRxiv, 2026
Redox regulation and dynamic control of brain-selective kinases BRSK1/2 in the AMPK family through cysteine-based mechanisms
GN Bendzunas, DP Byrne, S Shrestha, LA Daly, SO Oswald, S Katiyar, et al.
eLife 13, 2025
ICEPIC: A Toolkit to Discover Ice Binding Proteins from Sequence
J Zhang, S Suresh, S Gleizer, S Ewens, A Venkat, V Zulkower, T Biernacki, et al.
bioRxiv, 2025
Glydentify, a deep learning tool for classifying glycosyltransferase function
A Venkat, R Fang, Z Zhou, S Gill, N Kannan
GLYCOBIOLOGY 34 (11), 2024
Tree visualizations of protein sequence embedding space enable improved functional clustering of diverse protein superfamilies
W Yeung, Z Zhou, L Mathew, N Gravel, R Taujale, B O'Boyle, M Salcedo, et al.
Briefings in Bioinformatics 24 (1), 2023
Mechanistic and evolutionary insights into isoform-specific 'supercharging' in DCLK family kinases
A Venkat, G Watterson, DP Byrne, BO Boyle, S Shrestha, N Gravel, et al.
eLife, 2023
Evolution of fold-A glycosyltransferases and GTXplorer, a new tool for comparative glycomics
A Venkat, D Tehrani, R Taujale, W Yeung, S Soleymani, A Priyadarshi, et al.
Journal of Biological Chemistry 299 (3), 2023
Prevalence and homology of the pneumococcal serine-rich repeat protein at the global scale
J Aceil, A Venkat, E Pan, N Kannan, FY Avci
Microbiology Spectrum 11 (3), 2023
Phosphorylation-dependent pseudokinase domain dimerization drives full-length MLKL oligomerization
Y Meng, SE Garnish, KA Davies, KA Black, AP Leis, CR Horne, et al.
Nature Communications 14 (1), 2023
Principles of Modularity in Enzyme Evolution
A Venkat
University of Georgia (Dissertation), 2023
XAI meets biology: a comprehensive review of explainable AI in bioinformatics applications
Z Zhou, M Hu, M Salcedo, N Gravel, W Yeung, A Venkat, D Guo, J Zhang, et al.
arXiv preprint, 2023
Glydentify, a tool for unsupervised classification of glycosyltransferase function
A Venkat, N Kannan
GLYCOBIOLOGY 33 (11), 2023
Modularity of the hydrophobic core and evolution of functional diversity in fold A glycosyltransferases
A Venkat, D Tehrani, R Taujale, W Yeung, N Gravel, KW Moremen, et al.
Journal of Biological Chemistry 298 (8), 2022
Polymerization of the backbone of the pectic polysaccharide rhamnogalacturonan I
RA Amos, MA Atmodjo, C Huang, Z Gao, A Venkat, R Taujale, N Kannan, et al.
Nature Plants 8 (11), 2022
Peters plus syndrome mutations affect the function and stability of human β1, 3-glucosyltransferase
A Zhang, A Venkat, R Taujale, JL Mull, A Ito, N Kannan, RS Haltiwanger
Journal of Biological Chemistry 297 (1), 2021
Responses to 10 common criticisms of anti-racism action in STEMM
ML Gosztyla, L Kwong, NA Murray, CE Williams, N Behnke, P Curry, et al.
PLoS Computational Biology 17 (7), 2021
KinOrtho: a method for mapping human kinase orthologs across the tree of life and illuminating understudied kinases
LC Huang, R Taujale, N Gravel, A Venkat, W Yeung, DP Byrne, PA Eyers, et al.
BMC Bioinformatics 22 (1), 2021
GTXplorer: A portal to navigate and visualize the evolutionary information encoded in fold A glycosyltransferases
R Taujale, S Soleymani, A Priyadarshi, A Venkat, W Yeung, KJ Kochut, et al.
Glycobiology 31 (11), 2021
Evolution of functional diversity in the holozoan tyrosine kinome
W Yeung, A Kwon, R Taujale, C Bunn, A Venkat, N Kannan
Molecular Biology and Evolution 38 (12), 2021
Hydrophobic core variations distinguishing mechanistic divergence of fold a glycosyltransferases
A Venkat, R Taujale, W Yeung, N Gravel, K Moremen, N Kannan, et al.
GLYCOBIOLOGY 31 (12), 2021
Mapping sequence-structure-function relationships in glycosyltransferases using deep learning models and data visualization tools
N Kannan, R Taujale, Z Zhou, A Venkat, S Soleymani, A Priyadarshi, et al.
GLYCOBIOLOGY 31 (12), 2021
Deep evolutionary analysis reveals the design principles of fold A glycosyltransferases
R Taujale, A Venkat, LC Huang, W Yeung, K Rasheed, AS Edison, et al.
eLife, 2020
Quantitative Structure–Mutation–Activity Relationship Tests (QSMART) model for protein kinase inhibitor response prediction
LC Huang, W Yeung, Y Wang, H Cheng, A Venkat, S Li, P Ma, K Rasheed, et al.
BMC Bioinformatics 21 (1), 2020
PathInsight: A Novel Tool for Modeling Biomolecular Pathways
A Venkat
University of California, San Diego (Thesis), 2017
Influence of water hardness on accumulation and effects of silver in the green alga, Raphidocelis subcapitata
A Venkat, AL Amerson, GK Bielmyer-Fraser
Georgia Journal of Science 74 (2), 2016
Quantitative analysis of the trends exhibited by the three interdisciplinary biological sciences: biophysics, bioinformatics, and systems biology
J Kang, S Park, A Venkat, A Gopinath
Journal of Microbiology & Biology Education 16 (2), 2015